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Journal Papers:
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- Immersed Lagrangian Floer theory, with Dominic Joyce. J. Differential Geom. 86 (2010), no. 3, 381-500.
- Quasi-isomorphisms of $A_{\infty}$-algebras and oriented planar trees. Illinois J. Math. 51 (2007), no. 2, 325-338.
- Morse homology and manifolds with boundary. Commun. Contemp. Math. 9 (2007), no. 3, 301-334.
- A connected sum of knots and Fintushel-Stern knot surgery on 4-manifolds. Turkish J. Math. 30 (2006), no. 1, 87-93.
- Intersection theory for Lagrangian immersions. Math. Res. Lett. 12 (2005), no. 4, 543-550.
- Hofer's symplectic energy and Lagrangian intersections in contact geometry. J. Math. Kyoto Univ. 41 (2001), no. 3, 593-609.
- An estimate of genus of links. J. Knot Theory Ramifications 8 (1999), no. 4, 405-414.

- Symplectic displacement energy for exact Lagrangian immersions. preprint (2015). PDF
- Morse homology of manifolds with boundary revisited. preprint (2014). PDF
- Cup products on Morse homology of manifolds with boundary. preprint (2011). PDF
- Gluing constructions of pseudo-holomorphic discs and desingularization. preprint (2006). PDF
- Floer homology and concave ends. preprint (2006), partially contained in "Morse homology and manifolds with boundary".

- J-holomorphic curves in symplectic topology. (2018). PDF
- Introduction to Lagrangian Floer homology. Homological Mirror Symmetry Seminar, at Mathematical Institute, Oxford (2006).
- A crash course of Floer homology for Lagrangian intersections. (2003). PDF

Tokyo Metropolitan University